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| people:fangq 2025/05/03 18:46 | people:fangq 2025/08/16 22:14 current | ||
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| Associate Member: \\ | Associate Member: \\ | ||
| [[https://physics.mcmaster.ca/|Department of Physics and Astronomy]] & \\ | [[https://physics.mcmaster.ca/|Department of Physics and Astronomy]] & \\ | ||
| - | [[https://www.eng.mcmaster.ca/sept/|W. Booth School of Engineering Practice and Technology]] | + | [[https://www.eng.mcmaster.ca/sept/|W. Booth School of Engineering Practice and Technology]] \\ \\ |
| + | [[https://scholar.google.com/citations?user=RaGyRZ8AAAAJ&hl=en|Google Scholar]] | ||
| \\ | \\ | ||
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| ===== Teaching (current courses bolded)===== | ===== Teaching (current courses bolded)===== | ||
| ^Undergraduate^^Graduate^^ | ^Undergraduate^^Graduate^^ | ||
| - | ^Course^Name^Course^Name^ | + | | **iBEHS 4F04 (2021-)** | **Biomedical Instrumentation** | **BME 6F04** | **Biomedical Instrumentation** | |
| - | | [[http://wiki.mcmaster.ca/EP3A03|EP 3A03]] (2007-2008) | Applications of Photonics | **BME 701 (2007-)** | Introduction to Biomedical Engineering \\ (Biophotonics) | | + | | **EP/MP 4I03 (2007-)** | **Introduction to Biophotonics** | **EP/MP/BME 6I03** | **Introduction to Biophotonics** | |
| - | | [[http://wiki.mcmaster.ca/EP3W04|EP 3W04/2W03]] (2009-2014) | Acquisition and Analysis of \\ Experimental Information | ECE 778 | Nanotechnology \\ (Nanomedicine and bionanotechnology) | | + | | **iBEHS 1P10 (Mentor, 2017-)** | **Health Solution Design Projects I** | **BME 707 & EP 709 (2014-)** | **Selected topics in biophotonics** | |
| - | | **[[http://wiki.mcmaster.ca/EP4I03|EP/MP 4I03]] (2007-)** | Introduction to Biophotonics | **EP/MP/BME 6I03** | Introduction to Biophotonics | | + | | EP 3A03 (2007-2008) | Applications of Photonics | **BME 701 (2007-)** | **Introduction to Biomedical Engineering \\ (Biophotonics)** | |
| - | | [[http://wiki.mcmaster.ca/EP3G03|EP 4G03]] (2007-2015) | Optical Instrumentation | EP 6G03 | Optical Instrumentation | | + | | EP 3W04/2W03 (2009-2014) | Acquisition and Analysis of \\ Experimental Information | **CAS 787 (2021-)** | **Mobility in the Aging Population** | |
| - | | EP 4U02 (2015-2017) | Advanced Physics Lab \\ (Photonics) | **BME 707 & EP 709 (2014-)** | Selected topics in biophotonics | | + | | EP 4G03 (2007-2015) | Optical Instrumentation | EP 6G03 (2007-2015) | Optical Instrumentation | |
| - | | EP 4US2 (2023) | Advanced Physics Lab \\ Smart Systems | **CAS 787 (2021-)** | Mobility in the Aging Population | | + | | EP 4U02 (2015-2017) | Advanced Physics Lab \\ (Photonics) | EP 702 (2024-2025) | Graduate Seminar (2024-2025) | |
| - | | **iBEHS 1P10 (Mentor, 2017-** | Health Solution Design Projects I | EP 702 (2024-2025) | Graduate Seminar (2024-2025) | | + | | EP 4US2 (2023) | Advanced Physics Lab \\ Smart Systems | ECE 778 | Nanotechnology \\ (Nanomedicine and bionanotechnology) | |
| - | | iBEHS 3P04 (2020-2023) | Health Solution Design Projects III | | | | + | | iBEHS 3P04 (2020-2023) | Health Solution Design Projects III | | | |
| - | | **iBEHS 4F04/6F04 (2021-)** | Biomedical Instrumentation | | | | + | ^ Research courses & Thesis ^^^^ |
| - | | **EP3H04/4H04 & equivalent iSci/LifeSci/BHSc** || Undergraduate research course || | + | | **EP 3H04/4H04 & equivalent \\ IBEHS 3I06, ISCI 3A12, LIFESCI 3RP3/4** || **Undergraduate research course** || |
| - | | **ISCI4A12** || Integrated Science Thesis || | + | | **ISCI 4A12** || **Integrated Science Thesis** || |
| + | | **IBEHS 4E09A/B** || **iBioMed HESE Thesis** || | ||
| + | | **SEPT MEng Research MANUFACT 701** || **MEng Research Project** || | ||
| \\ | \\ | ||
| ===== Selected Publications ===== | ===== Selected Publications ===== | ||
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| ==== Fluorescence Lifetime Imaging (FLIM) ==== | ==== Fluorescence Lifetime Imaging (FLIM) ==== | ||
| + | * Morgan Richards, Nikolina Malic, Elizabeth J. Osterlund, Andrea Rhikkaella Buendia, Laura Polga, Ray Truant, Qiyin Fang, "Multiplexed confocal FLIM for dynamic molecular imaging in live cells" Discover Imaging, 2:7, 2025 ([[https://link.springer.com/article/10.1007/s44352-025-00010-5 |DOI 10.1007/s44352-025-00010-5]]) | ||
| * Morgan Richards, Elizabeth Osterlund, Andrea Buendia, Nikolina Malic, Ray Truant, Qiyin Fang, “Multispectral multiplexed confocal FLIM for live cell imaging,” J. Phys. Photonics 7(1):015003, 2025 ([[http://doi.org://10.1088/2515-7647/ad936b|DOI 10.1088/2515-7647/ad936b]]) | * Morgan Richards, Elizabeth Osterlund, Andrea Buendia, Nikolina Malic, Ray Truant, Qiyin Fang, “Multispectral multiplexed confocal FLIM for live cell imaging,” J. Phys. Photonics 7(1):015003, 2025 ([[http://doi.org://10.1088/2515-7647/ad936b|DOI 10.1088/2515-7647/ad936b]]) | ||
| * Xu Mei, Qiyin Fang, and P. Ravi Selvaganapathy, "Three-dimensional oxygen concentration monitoring in hydrogels using low-cost phosphorescence lifetime imaging for tissue engineering," Biomed. Opt. Express 14, 4759-4774 (2023) [[https://opg.optica.org/boe/fulltext.cfm?uri=boe-14-9-4759|Open Access]] | * Xu Mei, Qiyin Fang, and P. Ravi Selvaganapathy, "Three-dimensional oxygen concentration monitoring in hydrogels using low-cost phosphorescence lifetime imaging for tissue engineering," Biomed. Opt. Express 14, 4759-4774 (2023) [[https://opg.optica.org/boe/fulltext.cfm?uri=boe-14-9-4759|Open Access]] | ||
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| ==== Point-of-care diagnostics and sensing ==== | ==== Point-of-care diagnostics and sensing ==== | ||
| + | * Tianqi Hong, Meimei Peng, Marek Smieja, Qiyin Fang, "Representing particles' motion patterns in microfluidic imaging platform using deep variational embeddings," Journal of Physics: Photonics, 7(3):035005, 2025 ([[https://iopscience.iop.org/article/10.1088/2515-7647/add42e |DOI 10.1088/2515-7647/add42e]]) | ||
| * Tianqi Hong, Meimei Peng, Younggy Kim, Herb E. Schellhorn, Qiyin Fang, "Automated Cell Profiling in Imaging Flow Cytometry with Annotation-Efficient Learning," Optics & Laser Technology, 181, 111992, 2025, doi:10.1016/j.optlastec.2024.111992. ([[https://doi.org/10.1016/j.optlastec.2024.111992|Online]]) | * Tianqi Hong, Meimei Peng, Younggy Kim, Herb E. Schellhorn, Qiyin Fang, "Automated Cell Profiling in Imaging Flow Cytometry with Annotation-Efficient Learning," Optics & Laser Technology, 181, 111992, 2025, doi:10.1016/j.optlastec.2024.111992. ([[https://doi.org/10.1016/j.optlastec.2024.111992|Online]]) | ||
| * Yiping Wang, Mustafaa Wahab, Tianqi Hong, Kyle Molinari, Gail M. Gauvreau, Ruth P. Cusack, Zhen Gao, Imran Satia, and Qiyin Fang, "Automated Cough Analysis with Convolutional Recurrent Neural Network" Bioengineering 11(11):1105, 2024, ([[https://doi.org/10.3390/bioengineering11111105|doi:10.3390/bioengineering11111105]]). | * Yiping Wang, Mustafaa Wahab, Tianqi Hong, Kyle Molinari, Gail M. Gauvreau, Ruth P. Cusack, Zhen Gao, Imran Satia, and Qiyin Fang, "Automated Cough Analysis with Convolutional Recurrent Neural Network" Bioengineering 11(11):1105, 2024, ([[https://doi.org/10.3390/bioengineering11111105|doi:10.3390/bioengineering11111105]]). | ||
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| ==== GI Endoscopic Imaging ==== | ==== GI Endoscopic Imaging ==== | ||
| + | * Pyry Kiviharju, Nam Ha-Van, Lauri Vaha-Savo, Juha Tuomela, Clemens Icheln, Katsuyuki Haneda, Sergei Tretyakov, Jari Holopainen, Qiyin Fang, Hiroaki Hagiwara, Zachary D Taylor, "A Dual-Purpose Microwave-Optical Component for Wireless Capsule Endoscopy - a Feasibility Study by Radio Link Analysis," IEEE Transactions on Biomedical Engineering, 28:PP, 2025, ([[https://ieeexplore.ieee.org/document/10977965 |Open Access]]) | ||
| * Ian H. D. Phillips, David Armstrong and Qiyin Fang, "A Real-Time Endoscope Motion Tracker," IEEE Journal of Translational Engineering in Health and Medicine, 10:1-9, 2022, ([[http://doi.org/10.1109/JTEHM.2022.3214148|Open Access]]). | * Ian H. D. Phillips, David Armstrong and Qiyin Fang, "A Real-Time Endoscope Motion Tracker," IEEE Journal of Translational Engineering in Health and Medicine, 10:1-9, 2022, ([[http://doi.org/10.1109/JTEHM.2022.3214148|Open Access]]). | ||
| * Samir Sahli, Roy, C. C. Wang, Aparna Murthy, David Armstrong, M. Jamal Deen, and Qiyin Fang, "a 360 degree side view endoscope for lower GI tract mapping," Physics in Canada, 75(1): 18-20, 2015 | * Samir Sahli, Roy, C. C. Wang, Aparna Murthy, David Armstrong, M. Jamal Deen, and Qiyin Fang, "a 360 degree side view endoscope for lower GI tract mapping," Physics in Canada, 75(1): 18-20, 2015 | ||
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| ==== Multimodality Imaging ==== | ==== Multimodality Imaging ==== | ||
| + | * Sabrina Mastroianni, Anagha Vinod, Naiqi G. Xiao, Heather Johnson, Lehana Thabane, Qiyin Fang, and Ipsita Goswami, "Derivation of Novel Imaging Biomarkers of Neonatal Brain Injury Using Bedside Diffuse Optical Tomography: Protocol for a Prospective Feasibility Study," NeuroSci 6(3):60, 2025. [[https://doi.org/10.3390/neurosci6030060|Doi:10.3390/neurosci6030060]] | ||
| * Ramy Abdlaty, Lilian Doerwald-Munoz, Joseph Hayward, Thomas Farrell, Qiyin Fang, "Hyperspectral imaging assessment for radiotherapy induced skin-erythema: Pilot study,", Photodiagnosis and Photodynamic Therapy, 33: 102195, 2021, doi.org/10.1016/j.pdpdt.2021.102195 ([[https://doi.org/10.1016/j.pdpdt.2021.102195|online]]) | * Ramy Abdlaty, Lilian Doerwald-Munoz, Joseph Hayward, Thomas Farrell, Qiyin Fang, "Hyperspectral imaging assessment for radiotherapy induced skin-erythema: Pilot study,", Photodiagnosis and Photodynamic Therapy, 33: 102195, 2021, doi.org/10.1016/j.pdpdt.2021.102195 ([[https://doi.org/10.1016/j.pdpdt.2021.102195|online]]) | ||
| * Ramy Abdlaty, Joseph Hayward, Thomas Farrell, Qiyin Fang, "Skin erythema and pigmentation: a review of optical assessment techniques", Photodiagnosis and Photodynamic Therapy, 33: 102127, 2021, ([[https://doi.org/10.1016/j.pdpdt.2020.102127|online]]) | * Ramy Abdlaty, Joseph Hayward, Thomas Farrell, Qiyin Fang, "Skin erythema and pigmentation: a review of optical assessment techniques", Photodiagnosis and Photodynamic Therapy, 33: 102127, 2021, ([[https://doi.org/10.1016/j.pdpdt.2020.102127|online]]) | ||
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| === Technology in Aging & Rehabilitation === | === Technology in Aging & Rehabilitation === | ||
| - | * Haixin Wang, Guha Ganesh, Michael Zon, Oishee Ghosh, Henry Siu, Qiyin Fang, "A BLE based turnkey indoor positioning system for mobility assessment in aging-in-place settings," PLoS Digital Health, 000774, 2025 ([[https://doi.org/10.1371/journal.pdig.0000774|Doi:10.1371/journal.pdig.0000774]]) | + | * Haixin Wang, Guha Ganesh, Michael Zon, Oishee Ghosh, Henry Siu, Qiyin Fang, "A BLE based turnkey indoor positioning system for mobility assessment in aging-in-place settings," PLoS Digital Health, 4(4): e0000774, 2025 ([[https://doi.org/10.1371/journal.pdig.0000774|Doi:10.1371/journal.pdig.0000774]]) |
| * Isabel Rodrigues, M. Kalra, R. Zheng, A. Rabinovich, G. Ioannidis, D. Kobsar, SR Bray, JD Adachi, Q. Fang, A. Papaioannou, "Mapping context of sedentary behaviour in older adults who are prefrail and frail: an analysis of secondary outcomes from a longitudinal study (MAPS-B)," BMJ Open 2024;14:e084610. [[http://doi.org/10.1136/bmjopen-2024-084610|doi:10.1136/bmjopen-2024-084610]] | * Isabel Rodrigues, M. Kalra, R. Zheng, A. Rabinovich, G. Ioannidis, D. Kobsar, SR Bray, JD Adachi, Q. Fang, A. Papaioannou, "Mapping context of sedentary behaviour in older adults who are prefrail and frail: an analysis of secondary outcomes from a longitudinal study (MAPS-B)," BMJ Open 2024;14:e084610. [[http://doi.org/10.1136/bmjopen-2024-084610|doi:10.1136/bmjopen-2024-084610]] | ||
| * Isabel Rodrigues, P. Ching, M. Kalra, R. Zheng, A. Rabinovich, A. Papaioannou, C. Leckie, D. Kobsar, Q. Fang, S. Bray, J. D. Adachi. "Exploring the perspectives of older adults who are pre-frail and frail to identify interventions to reduce sedentary behaviour and improve mobility: A thematic content analysis." BMC Public Health, 2024; 24(6): 1582. [[http://doi.org/10.1186/s12889-024-19051-2|10.1186/s12889-024-19051-2]]. | * Isabel Rodrigues, P. Ching, M. Kalra, R. Zheng, A. Rabinovich, A. Papaioannou, C. Leckie, D. Kobsar, Q. Fang, S. Bray, J. D. Adachi. "Exploring the perspectives of older adults who are pre-frail and frail to identify interventions to reduce sedentary behaviour and improve mobility: A thematic content analysis." BMC Public Health, 2024; 24(6): 1582. [[http://doi.org/10.1186/s12889-024-19051-2|10.1186/s12889-024-19051-2]]. | ||
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| * Michael Zon, Guha Ganesh, M. Jamal Deen, and Qiyin Fang, "Context-Aware Medical Systems within Healthcare Environments: A Systematic Scoping Review to Identify Subdomains and Significant Medical Contexts" International Journal of Environmental Research and Public Health, 20(14): 6399, 2023 [[https://doi.org/10.3390/ijerph20146399|Open Access doi:10.3390/ijerph20146399]] | * Michael Zon, Guha Ganesh, M. Jamal Deen, and Qiyin Fang, "Context-Aware Medical Systems within Healthcare Environments: A Systematic Scoping Review to Identify Subdomains and Significant Medical Contexts" International Journal of Environmental Research and Public Health, 20(14): 6399, 2023 [[https://doi.org/10.3390/ijerph20146399|Open Access doi:10.3390/ijerph20146399]] | ||
| * Brenda Vrkljan, Marla K. Beauchamp, Paula Gardner, Qiyin Fang, Ayse Kuspinar, Paul D. McNicholas, K. Bruce Newbold, Julie Richardson, Darren Scott, Manaf Zargoush and Vincenza Gruppuso, "Re-engaging in Aging and Mobility Research in the COVID-19 Era: Early Lessons from Pivoting a Large-Scale, Interdisciplinary Study amidst a Pandemic," Canadian Journal on Aging / La Revue Canadienne Du Vieillissement, 1-7, 2021, doi:10.1017/S0714980821000374 ([[http://doi.org/10.1017/S0714980821000374|Open Access]]) | * Brenda Vrkljan, Marla K. Beauchamp, Paula Gardner, Qiyin Fang, Ayse Kuspinar, Paul D. McNicholas, K. Bruce Newbold, Julie Richardson, Darren Scott, Manaf Zargoush and Vincenza Gruppuso, "Re-engaging in Aging and Mobility Research in the COVID-19 Era: Early Lessons from Pivoting a Large-Scale, Interdisciplinary Study amidst a Pandemic," Canadian Journal on Aging / La Revue Canadienne Du Vieillissement, 1-7, 2021, doi:10.1017/S0714980821000374 ([[http://doi.org/10.1017/S0714980821000374|Open Access]]) | ||
| - | * Henry Y.-H. Siu, B. Delleman, J. Langevin, Dee Mangin, Michelle Howard, Qiyin Fang, David Price, David Chan, "Demonstrating a Technology-Mediated Intervention to Support Medication Adherence in Community-Dwelling Older Adults in Primary Care: A Feasibility Study." Gerontology and Geriatric Medicine, 5:1-11, 2019, doi.org/10.1177/2333721419845179 ([[https://doi.org/10.1177/2333721419845179|online]]) | + | * Henry Y.-H. Siu, B. Delleman, J. Langevin, Dee Mangin, Michelle Howard, Qiyin Fang, David Price, David Chan, "Demonstrating a Technology-Mediated Intervention to Support Medication Adherence in Community-Dwelling Older Adults in Primary Care: A Feasibility Study." Gerontology and Geriatric Medicine, 5:1-11, 2019, doi.org/10.1177/2333721419845179 ([[https://doi.org/10.1177/2333721419845179|online]]) |
| * Sinead Dufour, Donna Fedorkow, Jessica Kun, Shirley S.X. Deng, & Qiyin Fang, "Exploring the Impact of a Mobile Health Solution for Postpartum Pelvic Floor Muscle Training: Pilot Randomized Controlled Feasibility Study." JMIR MHealth and UHealth, 7(7): e12587, 2019, doi.org/10.2196/12587 ([[https://doi.org/10.2196/12587|Open Access]]) | * Sinead Dufour, Donna Fedorkow, Jessica Kun, Shirley S.X. Deng, & Qiyin Fang, "Exploring the Impact of a Mobile Health Solution for Postpartum Pelvic Floor Muscle Training: Pilot Randomized Controlled Feasibility Study." JMIR MHealth and UHealth, 7(7): e12587, 2019, doi.org/10.2196/12587 ([[https://doi.org/10.2196/12587|Open Access]]) | ||
| - | |||
| - | === General Reviews & Editorials === | ||
| - | * Qiyin Fang, Charles Kervrann, David Nolte, Oxana Semyachkina-Glushkovskaya, Shuo Tang, Yuji Matsuura, and Zachary Smith, "Editorial Introduction to JSTQE Special Issue on Biophotonics (2023)," IEEE Journal of Selected Topics in Quantum Electronics, 29(4):1-4 Biophotonics, July-Aug. 2023, Art no. 0200403, [[http://doi.org/10.1109/JSTQE.2023.3287745|Open Access doi: 10.1109/JSTQE.2023.3287745]]. | ||
| - | * Thomas Beyer, Dale L. Bailey, Udo J. Birk, Irene Buvat, Ciprian Catana, Zhen Cheng, Qiyin Fang, Federico Giove, Claudia Kuntner, Elmar Laistler, Francesco Moscato, Stephan G. Nekolla, Ivo Rausch, Itamar Ronen, Simo Saarakkala, Kris Thielemans, Wouter van Elmpt, and Ewald Moser, "Medical Physics and Imaging–A Timely Perspective," Frontiers in Physics, 9: 206, 2021. doi.org/10.3389/fphy.2021.634693, ([[https://www.frontiersin.org/article/10.3389/fphy.2021.634693|Open Access]]) | ||
| - | * Ilko K. Ilev, David Nolte, Qiyin Fang, Giuliano Scarcelli, Yuji Matsuura, William Calhoun, Thomas Huser, "Editorial Introduction to JSTQE Special Issue on Biophotonics," IEEE Journal of Selected Topics in Quantum Electronics, 27(4): 0200404, 2021, doi.org/10.1109/JSTQE.2021.3072401 ([[http://doi.org/10.1109/JSTQE.2021.3072401|online]]) | ||
| - | ===== Current Regular Schedule (Winter 2025) ===== | + | ===== Current Regular Schedule (Fall 2025) ===== |
| ^ Time ^ Monday ^ Tuesday ^ Wednesday ^ Thursday ^ Friday ^ | ^ Time ^ Monday ^ Tuesday ^ Wednesday ^ Thursday ^ Friday ^ | ||
| - | | 8:30 - 9:30 | | EP 4I03 | | EP 4I03 | | | + | | 8:30 - 9:30 | IBEHS 4F04 | | IBEHS 4F04 | | | |
| - | | 9:30 - 10:30 | | EP 4I03 | | | | | + | | 9:30 - 10:30 | IBEHS 4F04 | | MUFA | | | |
| - | | 10:30 - 11:30 | | | | | | | + | | 10:30 - 11:30 | Office Hour | | MUFA | | | |
| - | | 11:30 - 12:30 | | | | | | | + | | 11:30 - 12:30 | Lab Meeting | | | | | |
| - | | 12:30 - 13:30 | | Lab Meeting | | iBEHS 1P10 | | | + | | 12:30 - 13:30 | Lab Meeting | | | | | |
| - | | 13:30 - 14:30 | | EP 702 | | | | | + | | 13:30 - 14:30 | | | | | | |
| - | | 14:30 - 15:30 | | MUFA | Dept | | | | + | | 14:30 - 15:30 | | | Dept | | | |
| - | | 15:30 - 16:30 | | MUFA | Dept | | | | + | | 15:30 - 16:30 | | | Dept | | | |
| | 16:30 - 17:30 | | | | | | | | 16:30 - 17:30 | | | | | | | ||
| | 17:30 - 18:30 | | | | | | | | 17:30 - 18:30 | | | | | | | ||
