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| people:fangq 2025/02/01 21:12 | people:fangq 2025/02/15 10:14 current | ||
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| ^Contact^Mailing Address^ | ^Contact^Mailing Address^ | ||
| - | | Office: ETB 405 \\ Email: [[qiyin.fang@mcmaster.ca]] \\ Voice: (905) 525-9140 x 24227 \\ Lab: (905) \\ | ETB 405 \\ McMaster University \\ 1280 Main Street West \\ Hamilton, ON L8S 4K1 \\ | | + | | Office: ETB 405 \\ Email: [[qiyin.fang@mcmaster.ca]] \\ Voice: (905) 525-9140 x 24227 \\ Lab: ABB B105 \\ | ETB 405 \\ McMaster University \\ 1280 Main Street West \\ Hamilton, ON L8S 4K1 \\ | |
| ===== Education ===== | ===== Education ===== | ||
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| ===== Brief Biography ===== | ===== Brief Biography ===== | ||
| - | Qiyin Fang is a professor of [[https://www.eng.mcmaster.ca/engphys/|Engineering Physics]] at McMaster University and held the Canada Research Chair in Biophotonics from 2005-2016. He is a member of the [[http://msbe.mcmaster.ca/|McMaster School of Biomedical Engineering]] and associate member of several other programs. Dr. Fang's current research interests include multimodality sensing and imaging technologies for biomedical applications, e.g., optical biopsy, wide-field imaging, endoscopy, microscopy, point-of-care/in-home/wearable sensing systems, and distributed environmental sensing. | + | Qiyin Fang is a professor of [[https://www.eng.mcmaster.ca/engphys/|Engineering Physics]] at McMaster University and held the Canada Research Chair in Biophotonics from 2005-2016. He is a member of the [[http://msbe.mcmaster.ca/|McMaster School of Biomedical Engineering]] and associate member of several other programs at McMaster. Dr. Fang's current research interests include multimodality sensing and imaging technologies for biomedical applications, e.g., optical biopsy, wide-field imaging, endoscopy, microscopy, point-of-care/in-home/wearable sensing systems, distributed environmental sensing, and aging-in-place. |
| Prior to his current position at McMaster, Dr. Fang was a research scientist in the Minimally Invasive Surgical Technology Institute at the [[http://www.csmc.edu/|Cedars-Sinai Medical Center]] in Los Angeles. | Prior to his current position at McMaster, Dr. Fang was a research scientist in the Minimally Invasive Surgical Technology Institute at the [[http://www.csmc.edu/|Cedars-Sinai Medical Center]] in Los Angeles. | ||
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| | EP 4U02 | Advanced Physics Lab \\ (Photonics) | BME 707 & EP 709 | Selected topics in biophotonics | | | EP 4U02 | Advanced Physics Lab \\ (Photonics) | BME 707 & EP 709 | Selected topics in biophotonics | | ||
| | EP 4US2 | Advanced Physics Lab \\ Smart Systems | CAS 787 | Mobility in the Aging Population | | | EP 4US2 | Advanced Physics Lab \\ Smart Systems | CAS 787 | Mobility in the Aging Population | | ||
| - | | iBEHS 1P10 | Health Solution Design Projects I | | | | + | | iBEHS 1P10 | Health Solution Design Projects I | | EP 702 Graduate Seminar | |
| | iBEHS 3P04 | Health Solution Design Projects III | | | | | iBEHS 3P04 | Health Solution Design Projects III | | | | ||
| | iBEHS 4F04/6F04 | Biomedical Instrumentation | | | | | iBEHS 4F04/6F04 | Biomedical Instrumentation | | | | ||
| \\ | \\ | ||
| ===== Selected Publications ===== | ===== Selected Publications ===== | ||
| - | + | ||
| + | ==== Books (chapters), editorials, opinions, and commentaries ==== | ||
| + | * Qiyin Fang, Morgan Richards, Yiping Wang, "Sampling-Based Two-Dimensional Temporal Imaging," In: Liang, J. (eds) "Coded Optical Imaging," Springer, Cham. 2024, [[https://doi.org/10.1007/978-3-031-39062-3_24|doi:10.1007/978-3-031-39062-3_24]] | ||
| + | * Tianqi Hong, Meimei R. Peng, Qiyin Fang, "Chapter 00024 - Biophotonics in Microsystems", Reference Module in Materials Science and Materials Engineering, Elsevier, 2024, ISBN 9780128035818 [[https://doi.org/10.1016/B978-0-323-95478-5.00024-8|(DOI: 10.1016/B978-0-323-95478-5.00024-8)]] | ||
| + | * Qiyin Fang, Charles Kervrann, David Nolte, Oxana Semyachkina-Glushkovskaya, Shuo Tang, Yuji Matsuura, and Zachary Smith, "Editorial Introduction to JSTQE Special Issue on Biophotonics (2023)," IEEE Journal of Selected Topics in Quantum Electronics, 29(4):1-4 Biophotonics, July-Aug. 2023, Art no. 0200403, [[http://doi.org/10.1109/JSTQE.2023.3287745|Open Access doi: 10.1109/JSTQE.2023.3287745]]. | ||
| + | * Thomas Beyer, Dale L. Bailey, Udo J. Birk, Irene Buvat, Ciprian Catana, Zhen Cheng, Qiyin Fang, Federico Giove, Claudia Kuntner, Elmar Laistler, Francesco Moscato, Stephan G. Nekolla, Ivo Rausch, Itamar Ronen, Simo Saarakkala, Kris Thielemans, Wouter van Elmpt, and Ewald Moser, "Medical Physics and Imaging–A Timely Perspective," Frontiers in Physics, 9: 206, 2021. doi.org/10.3389/fphy.2021.634693, ([[https://www.frontiersin.org/article/10.3389/fphy.2021.634693|Open Access]]) | ||
| + | * Ilko K. Ilev, David Nolte, Qiyin Fang, Giuliano Scarcelli, Yuji Matsuura, William Calhoun, Thomas Huser, "Editorial Introduction to JSTQE Special Issue on Biophotonics," IEEE Journal of Selected Topics in Quantum Electronics, 27(4): 0200404, 2021, doi.org/10.1109/JSTQE.2021.3072401 ([[http://doi.org/10.1109/JSTQE.2021.3072401|online]]) | ||
| ==== Fluorescence Lifetime Imaging (FLIM) ==== | ==== Fluorescence Lifetime Imaging (FLIM) ==== | ||
| + | * Morgan Richards, Elizabeth Osterlund, Andrea Buendia, Nikolina Malic, Ray Truant, Qiyin Fang, “Multispectral multiplexed confocal FLIM for live cell imaging,” J. Phys. Photonics 7(1):015003, 2025 ([[http://doi.org://10.1088/2515-7647/ad936b|DOI 10.1088/2515-7647/ad936b]]) | ||
| * Xu Mei, Qiyin Fang, and P. Ravi Selvaganapathy, "Three-dimensional oxygen concentration monitoring in hydrogels using low-cost phosphorescence lifetime imaging for tissue engineering," Biomed. Opt. Express 14, 4759-4774 (2023) [[https://opg.optica.org/boe/fulltext.cfm?uri=boe-14-9-4759|Open Access]] | * Xu Mei, Qiyin Fang, and P. Ravi Selvaganapathy, "Three-dimensional oxygen concentration monitoring in hydrogels using low-cost phosphorescence lifetime imaging for tissue engineering," Biomed. Opt. Express 14, 4759-4774 (2023) [[https://opg.optica.org/boe/fulltext.cfm?uri=boe-14-9-4759|Open Access]] | ||
| * Elizabeth J. Osterlund, Nehad Hirmiz, Dang Nguyen, James M. Pemberton, Qiyin Fang, David Andrews, "Endoplasmic reticulum protein BIK binds to and inhibits mitochondria-localized anti-apoptotic proteins" Journal of Biological Chemistry, 299(4):104581, 2023, [[https://doi.org/10.1016/j.jbc.2022.102863|Online doi: 10.1016/j.jbc.2022.102863]] | * Elizabeth J. Osterlund, Nehad Hirmiz, Dang Nguyen, James M. Pemberton, Qiyin Fang, David Andrews, "Endoplasmic reticulum protein BIK binds to and inhibits mitochondria-localized anti-apoptotic proteins" Journal of Biological Chemistry, 299(4):104581, 2023, [[https://doi.org/10.1016/j.jbc.2022.102863|Online doi: 10.1016/j.jbc.2022.102863]] | ||
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| ==== Time-resolved Fluorescence in Optical Biopsy ==== | ==== Time-resolved Fluorescence in Optical Biopsy ==== | ||
| - | * Erica Dao, Gabriella Gohla, Phillip Williams, Peter Lovrics, Fares Badr, Qiyin Fang, Thomas J. Farrell, Michael J. Farquharson, "Multivariate analysis of breast tissue using optical parameters extracted from a combined time-resolved fluorescence and diffuse reflectance system for tumor margin detection," J. Biomed. Opt. 28(8) 085001, [[https://doi.org/10.1117/1.JBO.28.8.085001|Open Access]] | + | * Sarah Costa, Qiyin Fang, Thomas Farrell, Erica Dao, Mic Farquharson, "Time-resolved fluorescence and diffuse reflectance for lung squamous carcinoma margin detection," Lasers in Surgery & Medicine, 56:279–287, 2024; [[https://doi.org/10.1002/lsm.23761|doi:10.1002/lsm.23761]]. |
| + | * Erica Dao, Gabriella Gohla, Phillip Williams, Peter Lovrics, Fares Badr, Qiyin Fang, Thomas J. Farrell, Michael J. Farquharson, "Multivariate analysis of breast tissue using optical parameters extracted from a combined time-resolved fluorescence and diffuse reflectance system for tumor margin detection," J. Biomed. Opt. 2023, 28(8) 085001, [[https://doi.org/10.1117/1.JBO.28.8.085001|Open Access]] | ||
| * Erica Dao, Gabriela Gohla, Phillip Williams, Peter Lovrics, Fares Badr, Qiyin Fang, Thomas Farrell, Michael Farquharson, "Breast tissue analysis using a clinically compatible combined time-resolved fluorescence and diffuse reflectance (TRF-DR) system," Lasers Surg Med. 2023; 55(8):769-783. [[https://doi.org/10.1002/lsm.23710|online]] | * Erica Dao, Gabriela Gohla, Phillip Williams, Peter Lovrics, Fares Badr, Qiyin Fang, Thomas Farrell, Michael Farquharson, "Breast tissue analysis using a clinically compatible combined time-resolved fluorescence and diffuse reflectance (TRF-DR) system," Lasers Surg Med. 2023; 55(8):769-783. [[https://doi.org/10.1002/lsm.23710|online]] | ||
| * N. Shalaby, A. Al-Ebraheem, D. Le, S. Cornacchi, Q. Fang, T. Farrell, P. Lovrics, G. Gohla, S. Reid, N. Hodgson, M. Farquharson, “Time-Resolved Fluorescence (TRF) and Diffuse Reflectance Spectroscopy (DRS) for Margin Analysis in Breast Cancer,” Lasers in Surgery and Medicine,50(3):236–245, 2018 ({{:public:publications:fangq_shalabyn_2018_tr-breast.pdf|PDF}}) | * N. Shalaby, A. Al-Ebraheem, D. Le, S. Cornacchi, Q. Fang, T. Farrell, P. Lovrics, G. Gohla, S. Reid, N. Hodgson, M. Farquharson, “Time-Resolved Fluorescence (TRF) and Diffuse Reflectance Spectroscopy (DRS) for Margin Analysis in Breast Cancer,” Lasers in Surgery and Medicine,50(3):236–245, 2018 ({{:public:publications:fangq_shalabyn_2018_tr-breast.pdf|PDF}}) | ||
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| ==== Point-of-care diagnostics and sensing ==== | ==== Point-of-care diagnostics and sensing ==== | ||
| + | * Tianqi Hong, Meimei Peng, Younggy Kim, Herb E. Schellhorn, Qiyin Fang, "Automated Cell Profiling in Imaging Flow Cytometry with Annotation-Efficient Learning," Optics & Laser Technology, 181, 111992, 2025, doi:10.1016/j.optlastec.2024.111992. ([[https://doi.org/10.1016/j.optlastec.2024.111992|Online]]) | ||
| + | * Yiping Wang, Mustafaa Wahab, Tianqi Hong, Kyle Molinari, Gail M. Gauvreau, Ruth P. Cusack, Zhen Gao, Imran Satia, and Qiyin Fang, "Automated Cough Analysis with Convolutional Recurrent Neural Network" Bioengineering 11(11):1105, 2024, ([[https://doi.org/10.3390/bioengineering11111105|doi:10.3390/bioengineering11111105]]). | ||
| * Eric Mahoney, Jessica Kun, Marek Smieja, Qiyin Fang, "Review—Point-of-Care Urinalysis with Emerging Sensing and Imaging Technologies," Journal of Electrochemical Society, 167(3): 037518, 2020, doi.org/10.1149/2.0182003JES ([[http://jes.ecsdl.org/content/167/3/037518.abstract|Open Access]]) | * Eric Mahoney, Jessica Kun, Marek Smieja, Qiyin Fang, "Review—Point-of-Care Urinalysis with Emerging Sensing and Imaging Technologies," Journal of Electrochemical Society, 167(3): 037518, 2020, doi.org/10.1149/2.0182003JES ([[http://jes.ecsdl.org/content/167/3/037518.abstract|Open Access]]) | ||
| * Jessica Kun, Marek Smieja, Bo Xiong, Leyla Soleymani, Qiyin Fang, "The Use of Motion Analysis as Particle Biomarkers in Lensless Optofluidic Projection Imaging for Point of Care Urine Analysis," Sci Rep 9, 17255, 2019, doi:10.1038/s41598-019-53477-8 ([[https://www.nature.com/articles/s41598-019-53477-8|online]]) | * Jessica Kun, Marek Smieja, Bo Xiong, Leyla Soleymani, Qiyin Fang, "The Use of Motion Analysis as Particle Biomarkers in Lensless Optofluidic Projection Imaging for Point of Care Urine Analysis," Sci Rep 9, 17255, 2019, doi:10.1038/s41598-019-53477-8 ([[https://www.nature.com/articles/s41598-019-53477-8|online]]) | ||
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| === Technology in Aging & Rehabilitation === | === Technology in Aging & Rehabilitation === | ||
| + | * Isabel Rodrigues, M. Kalra, R. Zheng, A. Rabinovich, G. Ioannidis, D. Kobsar, SR Bray, JD Adachi, Q. Fang, A. Papaioannou, "Mapping context of sedentary behaviour in older adults who are prefrail and frail: an analysis of secondary outcomes from a longitudinal study (MAPS-B)," BMJ Open 2024;14:e084610. [[http://doi.org/10.1136/bmjopen-2024-084610|doi:10.1136/bmjopen-2024-084610]] | ||
| + | * Isabel Rodrigues, P. Ching, M. Kalra, R. Zheng, A. Rabinovich, A. Papaioannou, C. Leckie, D. Kobsar, Q. Fang, S. Bray, J. D. Adachi. "Exploring the perspectives of older adults who are pre-frail and frail to identify interventions to reduce sedentary behaviour and improve mobility: A thematic content analysis." BMC Public Health, 2024; 24(6): 1582. [[http://doi.org/10.1186/s12889-024-19051-2|10.1186/s12889-024-19051-2]]. | ||
| + | * Isabel Rodrigues, S. Tariq, A. Kouroukis, R. Swance, J. Adachi, S. Bray S, Qiyin Fang, George Ioannidis, D. Kobsar, A. Rabinovich, Alexandra Papaioannou, Rong Zheng, "Mapping sedentary behaviour (MAPS-B) in winter and spring using wearable sensors, indoor positioning systems, and diaries in older adults who are pre-frail and frail: A feasibility longitudinal study," PLoS ONE 19(5): e0290197, 2024. [[https://doi.org/10.1371/journal.pone.0290197|open access, doi:10.1371/journal.pone.0290197]] | ||
| * Michael Zon, Guha Ganesh, M. Jamal Deen, and Qiyin Fang, "Context-Aware Medical Systems within Healthcare Environments: A Systematic Scoping Review to Identify Subdomains and Significant Medical Contexts" International Journal of Environmental Research and Public Health, 20(14): 6399, 2023 [[https://doi.org/10.3390/ijerph20146399|Open Access doi:10.3390/ijerph20146399]] | * Michael Zon, Guha Ganesh, M. Jamal Deen, and Qiyin Fang, "Context-Aware Medical Systems within Healthcare Environments: A Systematic Scoping Review to Identify Subdomains and Significant Medical Contexts" International Journal of Environmental Research and Public Health, 20(14): 6399, 2023 [[https://doi.org/10.3390/ijerph20146399|Open Access doi:10.3390/ijerph20146399]] | ||
| * Brenda Vrkljan, Marla K. Beauchamp, Paula Gardner, Qiyin Fang, Ayse Kuspinar, Paul D. McNicholas, K. Bruce Newbold, Julie Richardson, Darren Scott, Manaf Zargoush and Vincenza Gruppuso, "Re-engaging in Aging and Mobility Research in the COVID-19 Era: Early Lessons from Pivoting a Large-Scale, Interdisciplinary Study amidst a Pandemic," Canadian Journal on Aging / La Revue Canadienne Du Vieillissement, 1-7, 2021, doi:10.1017/S0714980821000374 ([[http://doi.org/10.1017/S0714980821000374|Open Access]]) | * Brenda Vrkljan, Marla K. Beauchamp, Paula Gardner, Qiyin Fang, Ayse Kuspinar, Paul D. McNicholas, K. Bruce Newbold, Julie Richardson, Darren Scott, Manaf Zargoush and Vincenza Gruppuso, "Re-engaging in Aging and Mobility Research in the COVID-19 Era: Early Lessons from Pivoting a Large-Scale, Interdisciplinary Study amidst a Pandemic," Canadian Journal on Aging / La Revue Canadienne Du Vieillissement, 1-7, 2021, doi:10.1017/S0714980821000374 ([[http://doi.org/10.1017/S0714980821000374|Open Access]]) | ||
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| - | ===== Current Regular Schedule (Fall 2023) ===== | + | ===== Current Regular Schedule (Winter 2025) ===== |
| ^ Time ^ Monday ^ Tuesday ^ Wednesday ^ Thursday ^ Friday ^ | ^ Time ^ Monday ^ Tuesday ^ Wednesday ^ Thursday ^ Friday ^ | ||
| - | | 8:30 - 9:30 | | | | | | | + | | 8:30 - 9:30 | | EP 4I03 | | EP 4I03 | | |
| - | | 9:30 - 10:30 | | | | | | | + | | 9:30 - 10:30 | | EP 4I03 | | | | |
| | 10:30 - 11:30 | | | | | | | | 10:30 - 11:30 | | | | | | | ||
| | 11:30 - 12:30 | | | | | | | | 11:30 - 12:30 | | | | | | | ||
| - | | 12:30 - 13:30 | iBEHS 1P10 | iBEHS 4F04 | | iBEHS 4F04 | | | + | | 12:30 - 13:30 | | Lab Meeting | | iBEHS 1P10 | | |
| - | | 13:30 - 14:30 | iBEHS 1P10 | | | iBEHS 4F04 | | | + | | 13:30 - 14:30 | | EP 702 | | | | |
| - | | 14:30 - 15:30 | EP 4US2 | | | | | | + | | 14:30 - 15:30 | | MUFA | Dept | | | |
| - | | 15:30 - 16:30 | EP 4US2 | | | | | | + | | 15:30 - 16:30 | | MUFA | Dept | | | |
| - | | 16:30 - 17:30 | EP 4US2 | | | | | | + | | 16:30 - 17:30 | | | | | | |
| | 17:30 - 18:30 | | | | | | | | 17:30 - 18:30 | | | | | | | ||
