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public:research:optofluidics_imaging_devices 2025/05/12 14:35 public:research:optofluidics_imaging_devices 2026/03/02 19:02 current
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**Publications:** **Publications:**
 +  * Tianqi Hong, Meimei Peng, Marek Smieja, Qiyin Fang, "Representing particles' motion patterns in microfluidic imaging platform using deep variational embeddings," Journal of Physics: Photonics, 7(3):035005, 2025 ([[https://iopscience.iop.org/article/10.1088/2515-7647/add42e |online]])
  * Tianqi Hong, Meimei Peng, Younggy Kim, Herb E. Schellhorn, Qiyin Fang, "Automated Cell Profiling in Imaging Flow Cytometry with Annotation-Efficient Learning," Optics & Laser Technology, 181, 111992, 2025, doi:10.1016/j.optlastec.2024.111992. ([[https://doi.org/10.1016/j.optlastec.2024.111992|Online]])   * Tianqi Hong, Meimei Peng, Younggy Kim, Herb E. Schellhorn, Qiyin Fang, "Automated Cell Profiling in Imaging Flow Cytometry with Annotation-Efficient Learning," Optics & Laser Technology, 181, 111992, 2025, doi:10.1016/j.optlastec.2024.111992. ([[https://doi.org/10.1016/j.optlastec.2024.111992|Online]])
  * Tianqi Hong, Meimei R. Peng, Qiyin Fang, "Chapter 00024 - Biophotonics in Microsystems", Reference Module in Materials Science and Materials Engineering, Elsevier, 2024, ISBN 9780128035818 [[https://doi.org/10.1016/B978-0-323-95478-5.00024-8|(DOI: 10.1016/B978-0-323-95478-5.00024-8)]]   * Tianqi Hong, Meimei R. Peng, Qiyin Fang, "Chapter 00024 - Biophotonics in Microsystems", Reference Module in Materials Science and Materials Engineering, Elsevier, 2024, ISBN 9780128035818 [[https://doi.org/10.1016/B978-0-323-95478-5.00024-8|(DOI: 10.1016/B978-0-323-95478-5.00024-8)]]
 +  * Xu Mei, Qiyin Fang, and P. Ravi Selvaganapathy, "Three-dimensional oxygen concentration monitoring in hydrogels using low-cost phosphorescence lifetime imaging for tissue engineering," Biomed. Opt. Express 14, 4759-4774 (2023) [[https://opg.optica.org/boe/fulltext.cfm?uri=boe-14-9-4759|Open Access]]
  * Yiping Wang, Mustafaa Wahab, Tianqi Hong, Kyle Molinari, Gail M. Gauvreau, Ruth P. Cusack, Zhen Gao, Imran Satia, and Qiyin Fang, "Automated Cough Analysis with Convolutional Recurrent Neural Network" Bioengineering 11(11):1105, 2024, ([[https://doi.org/10.3390/bioengineering11111105|doi:10.3390/bioengineering11111105]]).   * Yiping Wang, Mustafaa Wahab, Tianqi Hong, Kyle Molinari, Gail M. Gauvreau, Ruth P. Cusack, Zhen Gao, Imran Satia, and Qiyin Fang, "Automated Cough Analysis with Convolutional Recurrent Neural Network" Bioengineering 11(11):1105, 2024, ([[https://doi.org/10.3390/bioengineering11111105|doi:10.3390/bioengineering11111105]]).
-  *  Bo Xiong, Tian-Qi Hong, Herb Schellhorn, Qiyin Fang, "Dual-Modality Imaging Microfluidic Cytometer for Onsite Detection of Phytoplankton," Photonics 8, 435, 2021. doi:10.3390/photonics8100435 ([[https://doi.org/10.3390/photonics8100435|Open Access]])+  *  Bo Xiong, Tianqi Hong, Herb Schellhorn, Qiyin Fang, "Dual-Modality Imaging Microfluidic Cytometer for Onsite Detection of Phytoplankton," Photonics 8, 435, 2021. doi:10.3390/photonics8100435 ([[https://doi.org/10.3390/photonics8100435|Open Access]])
  *  Bo Xiong, Eric Mahoney, Joe F. Lo, Qiyin Fang, "A Frequency-domain optofluidic dissolved oxygen sensor with total internal reflection design for in situ monitoring", IEEE Selected Topics in Quantum Electronics, 27(4):1-7 2021, doi.org/10.1109/JSTQE.2020.2997810 ({{:public:publications:do_time_2020_jstqe_pre.pdf|Preprint PDF}})   *  Bo Xiong, Eric Mahoney, Joe F. Lo, Qiyin Fang, "A Frequency-domain optofluidic dissolved oxygen sensor with total internal reflection design for in situ monitoring", IEEE Selected Topics in Quantum Electronics, 27(4):1-7 2021, doi.org/10.1109/JSTQE.2020.2997810 ({{:public:publications:do_time_2020_jstqe_pre.pdf|Preprint PDF}})
  * Eric James Mahoney, Bo Xiong, and Qiyin Fang, "Optical model of light propagation in total internal reflection fluorescence sensors," Applied Optics 59(34):10651-10660, 2020, doi:10.1364/AO.404112 ([[https://doi.org/10.1364/AO.404112|online]])   * Eric James Mahoney, Bo Xiong, and Qiyin Fang, "Optical model of light propagation in total internal reflection fluorescence sensors," Applied Optics 59(34):10651-10660, 2020, doi:10.1364/AO.404112 ([[https://doi.org/10.1364/AO.404112|online]])
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  *  Leo Hsu, P. Ravi Selvaganapathy, J. Brash, Q. Fang, C-Q. Xu, M. Jamal Deen, and Hong Chen, "Development of a low-cost Hemin-based dissolved oxygen sensor with anti-biofouling coating for water monitoring,” IEEE Sensors, 14(10):3400-3407, 2014 ({{:public:publications:hsuhh_do_ieee-sensor_2014.pdf|PDF}})   *  Leo Hsu, P. Ravi Selvaganapathy, J. Brash, Q. Fang, C-Q. Xu, M. Jamal Deen, and Hong Chen, "Development of a low-cost Hemin-based dissolved oxygen sensor with anti-biofouling coating for water monitoring,” IEEE Sensors, 14(10):3400-3407, 2014 ({{:public:publications:hsuhh_do_ieee-sensor_2014.pdf|PDF}})
  * Zhiyun Li, M. Jamal Deen, Qiyin Fang, and P. R. Selvaganapathy, "Design of a flat field concave-grating-based micro-Raman spectrometer for environmental applications," Applied Optics, 51(28):6855-6863, 2012 ({{:public:publications:liz_concave-grating_ao_2012.pdf|PDF}}).   * Zhiyun Li, M. Jamal Deen, Qiyin Fang, and P. R. Selvaganapathy, "Design of a flat field concave-grating-based micro-Raman spectrometer for environmental applications," Applied Optics, 51(28):6855-6863, 2012 ({{:public:publications:liz_concave-grating_ao_2012.pdf|PDF}}).
-  * Munir El-Desouki, Ognian Marinov, M. Jamal Deen, Qiyin Fang, "CMOS Active-Pixel Sensor With In-Situ Memory for Ultrahigh-Speed Imaging," IEEE Sensors Journal, 11(6): 1375-1379, 2011. ({{:public:publications:deenmj_el-desoukimm_marinovo_fangq_ieee_sensors_2011.pdf|PDF}})  
-  * Munir El-Desouki, Darek Palubiak, M. Jamal Deen, Qiyin Fang, Ognian Marinov, "A novel, high-dynamic range, high-speed, and high sensitivity CMOS imager using time-domain single-photon counting and avalanche photodiodes," IEEE Sensors Journal, 11(4): 1078-1083, 2011. ({{:public:publications:deenmj_el-desoukimm_marinovo_fangq_ieee_sensors_2011a.pdf|PDF}})  
  * J. F. Lo, P. Butte, Q. Fang, S. J. Chen, T. Papaioannou, E. S. Kim, M. Gundersen, L. Marcu, "Multilayered MOEMS tunable spectrometer for fluorescence lifetime detection," IEEE Photonics Technology Letters, 20(7):486-488, 2010.  ({{:public:publications:loj_ieee_photonics_2010.pdf|PDF}})   * J. F. Lo, P. Butte, Q. Fang, S. J. Chen, T. Papaioannou, E. S. Kim, M. Gundersen, L. Marcu, "Multilayered MOEMS tunable spectrometer for fluorescence lifetime detection," IEEE Photonics Technology Letters, 20(7):486-488, 2010.  ({{:public:publications:loj_ieee_photonics_2010.pdf|PDF}})
  * Joe Lo, Shi-Jui Chen, Qiyin Fang, Thanassis Papaioannou, Eun-Sok Kim, Martin Gundersen and Laura Marcu, “Performance of Diaphragmed Microlens for a Packaged Microspectrometer,” Sensors, 9: 859-868, 2009 ({{:public:publications:loj_sensors_2009.pdf|PDF}})   * Joe Lo, Shi-Jui Chen, Qiyin Fang, Thanassis Papaioannou, Eun-Sok Kim, Martin Gundersen and Laura Marcu, “Performance of Diaphragmed Microlens for a Packaged Microspectrometer,” Sensors, 9: 859-868, 2009 ({{:public:publications:loj_sensors_2009.pdf|PDF}})
  * Munir El-Desouki, M. Jamal Deen, Qiyin Fang, Louis W. C. Liu, Frances Tse and David Armstrong, “CMOS Image Sensors for High Speed Applications,” Sensors, 9: 430-444, 2009. ({{:public:publications:el-desoukim_sensors_2009.pdf|PDF}})   * Munir El-Desouki, M. Jamal Deen, Qiyin Fang, Louis W. C. Liu, Frances Tse and David Armstrong, “CMOS Image Sensors for High Speed Applications,” Sensors, 9: 430-444, 2009. ({{:public:publications:el-desoukim_sensors_2009.pdf|PDF}})
-  * N. Faramarzpour, M. M. El-Desouki, M. J. Deen, S. Shirani, Q. Fang, “CMOS photodetector systems for low-level light applications,” Journal of Material Sciences: Materials in Electronics, invited, 20(S1): 87-93, 2009. ({{:public:publications:faramarzpourn_mater_2009.pdf|PDF}}) 
-  * N. Faramarzpour, M. J. Deen, S. Shirani and Q. Fang, “Fully Integrated Single Photon Avalanche Diode Detector in Standard CMOS 0.18μm Technology,” IEEE Transactions on Electron Devices, Vol. 55(3): 760-767, 2008. ({{:public:publications:faramarzpourn_ieee_2008.pdf|PDF}}) 
-  * N. Faramarzpour, M. M. El-Desouki, M. J. Deen, Q. Fang, S. Shrani and L. W-C. Liu, “CMOS Imaging for Biomedical Applications,” IEEE Potentials, May/June: 31-36, 2008. ({{:public:publications:faramarzpourn_ieee_potentials_2007.pdf|PDF}})  
-  * N. Faramarzpour, M. J. Deen, S. Shirani, Q. Fang, L. W. C. Liu, F. Campos, and J. W. Swart, “CMOS based active pixel for low-light-level detection: analysis and measurements,” IEEE Transactions on Elec-tron Devices, 54(12): 3229-3237, 2007. ({{:public:publications:faramarzpourn_ieee_2007.pdf|PDF}}) 
  * J. F. Lo, Q. Fang, L. Marcu and E. S. Kim, “Wafer-level packaging of three-dimensional MOEMS device with lens diaphragm,” IEEE International Conference on Micro-Electrical-Mechanical Systems (MEMS), Jan. 21-25, 2007, Japan.  ({{:public:public:publications:loj_mems_2007.pdf|PDF}})   * J. F. Lo, Q. Fang, L. Marcu and E. S. Kim, “Wafer-level packaging of three-dimensional MOEMS device with lens diaphragm,” IEEE International Conference on Micro-Electrical-Mechanical Systems (MEMS), Jan. 21-25, 2007, Japan.  ({{:public:public:publications:loj_mems_2007.pdf|PDF}})
 +
 +\\
 +
 +===== Current Team members  =====
 +|  [[:people:FangQ|{{:people:profile:qiyin-fang_v1.jpg?100|Qiyin Fang}}]]  |  [[:people:dearaujo|{{:people:profile:dearaujr.jpg?130|Renato de Araujo}}]]  |[[:people:pengm|{{:people:meimei.jpg?110|Meimei Peng}}]]  |    [[:people:falik|{{:people:kristen.jpg?110|Kristen Falik}}]]  |
 +|  [[:people:FangQ | Qiyin Fang ]] \\ Eng Phys  |  [[:people:dearaujo|Dr. Renato de Araujo]]  |  [[:people:pengm|Meimei Ruoxi Peng]]\\ 2025 BME PhD  |  [[:people:falik|Kristen Falik]] \\ 2024 \\  iSci-Med & Bio Phys  |
 +
 +\\
 +
 +===== Alumni =====
 +|  [[:people:hongt|{{:people:profile:hongt.jpg?130|Tianqi Hong}}]]  |  [[:people:xiongb3|{{:people:profile:xiongb.jpg?80|Bo Xiong}}]]  |  [[:people:mahoneej|{{:people:profile:mahoneej.jpg?80|Eric Mahoney}}]]  |  [[:people:kunj|{{:people:profile:kunj.jpg?90X120}}]]  |
 +|  [[:people:hongt|Tianqi Hong]]\\ 2021-2025 \\ BME PhD |  [[:people:xiongb3|Bo Xiong]] \\ 2017-2021  \\ PhD BME  |  [[:people:mahoneej |Eric Mahoney]]\\ 2014-2016 MASc BME Transferred \\ 2016-2020 PhD BME  | [[:people:kunj| Jessica Kun]]  \\  2016-2019  \\ MSc BME  |
 +
\\ \\

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