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| \\ | \\ | ||
| **Anthony Tsikouras**\\ | **Anthony Tsikouras**\\ | ||
| - | Graduate student, M.A.Sc Engineering Physics candidate \\ | + | Postdoctoral Researcher in Engineering Physics \\ \\ |
| - | [[http://engphys.mcmaster.ca|McMaster University]] - Photonics stream\\ \\ | + | Ph.D. in Engineering Physics, McMaster University \\ |
| + | Bachelors in Engineering Physics (Photonics), McMaster University \\ \\ | ||
| **Email:** [[tsikoua@mcmaster.ca]] \\ | **Email:** [[tsikoua@mcmaster.ca]] \\ | ||
| - | **Skype ID:** atsikouras1 \\ | + | **Office/Lab:** ETB/306 \\ |
| - | **Office:** ETB/529 | **Lab:** ETB/431 \\ | + | **Phone:** (905) 902-3897 \\ \\ |
| - | **Office Phone:** (905) 525-9140 x26196 \\ | + | |
| - | **Lab Phone:** (905) 963-3777 \\ | + | |
| - | **Cell Phone:** (905) 902-3897 \\ | + | |
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| - | |||
| - | **SPIE Lecture Series:** | ||
| ===Research=== | ===Research=== | ||
| - | Fluorescence imaging typically involves tagging components of a sample with matched fluorophores, then measuring the fluorescence intensity of the sample when it is stimulated with an excitation source. Fluorescence lifetime imaging microscopy (FLIM) is a technique whereby the decay time of a fluorescence signal is used, instead of its intensity. While this adds a layer of complexity and cost, it can be a much more reliable method of obtaining information about the the cell's microenvironment. For instance, when a fluorophore is in close proximity to another molecule, Förster resonant energy transfer (FRET) occurs. In the FRET process, a fluorophore transfers its energy (which would normally be fluoresced) to the nearby molecule. This acts to quench the fluorescence lifetime, causing it to be shorter than the fluorophore's usual lifetime decay. Measuring the lifetime of the fluorophore can then be an excellent indicator of protein-protein interaction. | + | Compared to widefield imaging, confocal microscopy is able to detect finer details in thick samples by blocking the contributions from out-of-focus fluorophores, therefore allowing for optical sectioning. Performing a traditional laser-scanning confocal scan requires either a long integration time, or high excitation light fluence that can be damaging to biological samples. In order to acquire a confocal scan that is both fast and gentle, the process must be multiplexed, with the sample being interrogated by a large array of excitation foci with low individual optical power. The most common implementation of multi-point confocal uses a pair of spinning disks patterned with microlenses and pinholes, respectively, where a fraction of a turn of the spinning disk unit is enough to sweep the foci across the entire sample. At present, spinning disk confocal is by far the most commonly used implementation of confocal microscopy for high-throughput imaging applications, due to its high acquisition speed and gentle light levels without significant sacrifices to image quality. |
| - | I am prototyping a high-throughput high content microscope system that implements FLIM for use in drug discovery systems. The system is being optimized for speed to match high-throughput standards, as well as high spatial and temporal resolution. \\ | + | The spinning method for scanning, however, does not allow for the returning emission light to be "descanned" to a discrete detector - as a traditional mirror galvo scanner would. Instead, the emission light is scanned across an imaging detector in order to produce the reconstruction. This limits its choice of detectors to those that can be implemented into a dense imaging array, making it unsuitable for a number of imaging modalities, such as TCSPC-based FLIM, hyperspectral, or high quality intensity imaging via photon counting. Our design instead employs scanning windows that are capable of quickly scanning a large array of foci while maintaining a descanning path to discrete detectors. We are exploring a number of candidate detector options, including SPAD arrays, gated imagers, and those with specially-designed CMOS architectures. Our goal is to develop a multi-point confocal scanner that can compete with today's spinning disk confocal imagers in terms of frame rate and field-of-view, while outperforming them in image quality, imaging modality, and cost. \\ |
| ===Publications=== | ===Publications=== | ||
| + | **Tsikouras, A.**, Peronio, P., Rech, I., Hirmiz, N., Deen, M.J., Fang, Q. (2016) Characterization of SPAD array for multifocal high-content screening applications, MDPI Photonics, 3, 56. \\ | ||
| + | **Tsikouras, A.**, Berman, R., Andrews, D.W., Fang, Q. (2015) High-speed multifocal array scanning using refractive window tilting, Biomedical Optics Express. 6: 3737-3747 \\ | ||
| **Tsikouras, A.**, Ning, J., Ng. S., Sinclair, P., Berman, R., Andrews, D.W., Fang, Q. (2012) Streak camera crosstalk reduction using a multiple delay optical fiber bundle. Optics Letters. 37: 250-252. | **Tsikouras, A.**, Ning, J., Ng. S., Sinclair, P., Berman, R., Andrews, D.W., Fang, Q. (2012) Streak camera crosstalk reduction using a multiple delay optical fiber bundle. Optics Letters. 37: 250-252. | ||
| ===Conference Presentations=== | ===Conference Presentations=== | ||
| - | **Tsikouras, A.**, Ning, J., Ng. S., Sinclair, P., Berman, R., Andrews, D.W., Fang, Q. (2012) High-throughput FLIM-FRET nanoimaging for quantification of protein-protein interactions in high-content screening [oral presentation]. SPIE Optics + Photonics (conference). 8460-04. | + | **Tsikouras, A.** (2014), "Designing a scanning system for multiplexed confocal FLIM microscopy using refractive window tilting," Society of Biomolecular Imaging and Informatics 1. \\ |
| + | **Tsikouras, A.**, Yeh, S.C., Fang, Q. (2014), “Instrumentation design for high-speed FLIM for applications in high-content screening,” Electrochemical Society Meeting 225, 1487. \\ | ||
| + | **Tsikouras, A.**, Ning, J., Ng. S., Sinclair, P., Berman, R., Andrews, D.W., Fang, Q. (2012), High-throughput FLIM-FRET nanoimaging for quantification of protein-protein interactions in high-content screening [oral presentation]. SPIE Optics + Photonics (conference). 8460-04. | ||
| ===Schedule=== | ===Schedule=== | ||
| - | /*[[tsikourasa:summer_2011|Summer Plan]] | + | ^ ^ Monday ^ Tuesday ^ Wednesday ^ Thursday ^ Friday ^ |
| - | [[tsikourasa:fall_2012|Fall 2012 Plan]]*/ | + | |
| - | [[people:tsikourasa:spring_2013|Spring 2013 Plan]] \\ | + | |
| - | [[people:tsikourasa:plan|Upcoming Plan]] \\ | + | |
| - | [[people:tsikourasa:planningstage|Planning Stage]] | + | |
| - | + | ||
| - | I am on campus **9am-5pm** daily in my office (ETB/529), lab (ETB/431) or in the Biophotonics Facility (HSC/4H22). | + | |
| - | + | ||
| - | /*==Upcoming Experiments== | + | |
| - | + | ||
| - | ^ Date ^Experiment ^ | + | |
| - | ^ July 5 @ 2pm |Live cell imaging Mito-Tracker | | + | |
| - | ^ July 6 @ 10am |Live cell imaging FRET standards: C5V, C17V, C32V |*/ | + | |
| - | + | ||
| - | ^ ^ Monday ^ Tuesday ^ Wednesday ^ Thursday ^ Friday ^ | + | |
| - | ^ 7:30am | | | | | | | + | |
| ^ 8:30am | | | | | | | ^ 8:30am | | | | | | | ||
| ^ 9:30am | | | | | | | ^ 9:30am | | | | | | | ||
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| ^ 12:30pm | | | | | | | ^ 12:30pm | | | | | | | ||
| - | ^ 1:30pm | | | | | | | + | ^ 1:30pm | ^ Lab Meeting | | | | |
| ^ 2:30pm | | | | | | | ^ 2:30pm | | | | | | | ||
| ^ 3:30pm | | | | | | | ^ 3:30pm | | | | | | | ||
| ^ 4:30pm | | | | | | | ^ 4:30pm | | | | | | | ||
| ^ 5:30pm | | | | | | | ^ 5:30pm | | | | | | | ||
| - | ^ 6:30pm | | | | | | | ||
| - | ^ 7:30pm | | | | | | | ||
| - | ^ 8:30pm | | | | | | | ||
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| |CSE 701 |Foundations of Modern Scientific Programming | 2013/2014 Term 1 | | |CSE 701 |Foundations of Modern Scientific Programming | 2013/2014 Term 1 | | ||
| |CE 6TN4 |Image Processing | 2013/2014 Term 2 | | |CE 6TN4 |Image Processing | 2013/2014 Term 2 | | ||
| - | + | |BME 707 |Advanced Topics in Biophotonics | 2014/2015 Term 1 | | |
| - | Possible future courses: | + | |
| - | + | ||
| - | ^Course ^Description ^ 2013/2014 ^ | + | |
| - | |BIOCHEM 6H03 |Biotechnology and Drug Discovery | Term 2 | | + | |
| - | |BIOCHEM 711 |Special Topics in Microscopy and Photonics | Not Offered | | + | |
| - | |CAS 750 |Model-Based Image Reconstruction | Not Offered | | + | |
| - | |CAS 755 |Advanced Computational Methods and Models | Term 2 | | + | |
| - | |CHEM 6C03 |Statistics for Engineers | Term 2 | | + | |
| - | |ECE 710 |Engineering Optimization | Term 2 | | + | |
| - | |ECE 733 |Non-Linear Optimization for Electrical Engineers | Term 2 | | + | |
| - | |ECE 771 |Algorithms for Parameter and State Estimation | Term 1 | | + | |
| - | |ENG PHYS 726 |Optoelectronic Device Physics | Term 2 | | + | |
| - | |ENG PHYS 734 |Nonlinear Optics | Not Offered | | + | |
| - | |MOL BIOL 6H03 |Molecular Biology of Cancer | Term 2 | | + | |
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| ^Base Courses^^Additional Courses^^ | ^Base Courses^^Additional Courses^^ | ||
| ^Course^Date^Course^Date^ | ^Course^Date^Course^Date^ | ||
| - | |WHMIS | 2009, Sept. 2013 |Laser Safety | 2009 | | + | |WHMIS | 2009 |WHMIS Update | 2016/10 | |
| - | |Fire Safety | 2009, Sept. 2013 |Chemical Handling | 2010 | | + | |Fire Safety | 2009 |Fire Safety update | 2016/10 | |
| - | |Asbestos Awareness | 2009 |Biosafety BSL-2 | 2011, Sept. 2013 | | + | |Biosafety 2 | 2011 |BSL-2 update | 2016/10 | |
| - | |Ergonomics | 2009 |Emergency Code Procedures | Sept. 2013 | | + | |Laser Safety | 2009 |Laser Safety Lecture | 2010 | |
| - | |Slips/Trips/Falls | 2009 |Transportation of Dangerous Good | TBA | | + | |Asbestos Awareness | 2009 |Emergency Code Procedures | 2013/09 | |
| - | |Eng Phys Safety | 2009 | | + | |Ergonomics | 2016/10 |Chemical Handling | 2016/10 | |
| - | |Electrical Safety Awareness I | 2012 | | + | |Slips/Trips/Falls | 2016/10 | | | |
| + | |Eng Phys Safety | 2009 | | | | ||
| + | |Electrical Safety Awareness I | 2012 | | | | ||
| + | |Violence and Harrasssment | 2016/10 | | | | ||
| ===Related Links=== | ===Related Links=== | ||
| [[project_notes:multi_confocal_flim|Project Research Page]] | [[project_notes:multi_confocal_flim|Project Research Page]] | ||
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